Introduction
Cell Journey is an open-source tool for interactive exploration and analysis of single-cell trajectories. It allows operating in three-dimensional space at the level of the entire dataset and individual cells. Each implemented visualization comes with several parameters, allowing versatile and quick customization. The resulting graphs can be saved as raster graphics, vector graphics, or interactive visualization in a standalone html file format.
Features
- Quick and straightforward configuration.
- Explore multiple features simultaneously.
- Analyze datasets in csv, h5ad, and h5mu formats.
- Data filtering along with various plot customizations.
- Visualize 3D scatter plots, cone plots, streamlines, and streamlets.
- Represent feature activity values in a 3D embedding by volume plots.
- Automated differential gene expression analysis for calculated trajectories.
- Save publication-ready figures as well as interactive visualizations.